Category Archive | Science
March 26, 2007 | Monday
When campaigners collide
The misuse of science by campaign groups to promote their cause is all around us. But it has not gone unnoticed. Debates about the weight of evidence for or against scientific topics such as climate change, homeopathy or the safety of vaccinations are widespread. See for example the excellent column and blog by Guardian writer Ben Goldacre on ‘bad science’. This week, Goldacre points out that ‘as long as you cherry pick the data and keep one eye half closed, you can prove anything with science’.
But what happens when the objectives of groups campaigning on different themes are in conflict. This is the messy situation highlighted in a recent Political Update from the British Union for the Abolition of Vivisection (BUAV). The Update complains about a Greenpeace commissioned study which has concluded that a strain of genetically modified (GM) maize, approved for sale by the European commission, has shown signs of toxicity in laboratory rats. Greenpeace is claiming that such GM food poses significant health risks, but the BUAV responds that this study demonstrates little more than the supposed limitations of animal tests.
Both parties are guilty of distorting science by simply interpreting evidence as they wish to see it.
The briefing by Greenpeace is certainly confusing. It is difficult to distinguish the science from the claims of Greenpeace, who say this new scientific evaluation shows that the GM maize ‘should not have been approved in the EU or elsewhere’. But the abstract of the paper itself only states that ’it cannot be concluded that [this variety of GM maize] is a safe product’.
Predictably, the BUAV claims that the animal data simply ‘raise more questions than they answer’. Of course, as we have pointed out many times, there is no guarantee of perfect extrapolation to humans in every case of animal toxicity studies. Nonetheless, they give valuable information to be taken into account for regulatory decision-making. BUAV is guilty of deliberately confusing the scientific evidence with the risk evaluation process, which is a political judgement based on the best scientific data available.
It’s also been stressed many times before that impartial, evidence-based science advice is but one element of political decision-making. The evidence also shows that animal studies have proved invaluable in helping to protect people from hazardous chemicals.
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March 20, 2007 | Tuesday
Sensible science from Animal Farm
At last, a science documentary that’s engaging, doesn’t dumb down science too much and doesn’t create fake controversy (see last week’s New Scientist article about technological populism - we see all too many examples of that). And the mini series is mostly about animals – not natural history, but the science of genetic modification.
Animal Farm is the sort of programme that perhaps only Channel 4 has the guts to commission. It avoids the Brave New World and Frankenstein cliches, although it does include some weird and wonderful animals (mostly used in food production). The concept involves two presenters who investigate GM from different perspectives but in a very straightforward way. Dr Olivia Judson is an enthusiastic scientist, while Giles Coren is a sceptical foodie. I loved Sam Wollaston’s review in today’s Guardian which characterised both of them as GM creatures.
But there should have been more rigorous testing of the GM food. It’s all very well Giles Coren appealing to the yuk factor and having his prejudices confirmed by the apparently bland taste of his ‘GM’ steak, but where was the blind taste test?
Next week I’m hoping to see some cute mice instead of featherless chickens and muscle bound cattle. The real benefits of genetically modifying animals are in medical research, which uses close to one million GM mice every year in the UK alone.
March 07, 2007 | Wednesday
Do zebrafish need environmental enrichment?
The topic of discussion for a meeting tomorrow of an organisation known as the Laboratory Animal Science Association seemed to me initially to be taking welfare to slightly crazy heights.
After all, although zebrafish are fast becoming the model of choice for many biologists, I thought that they were primarily used for study of the embryo and development – not too much scope for pond weed and treasure chests there. Even if adult fish are in labs there’s hot debate about whether fish actually perceive pain or discomfort as we know it; and how much enrichment does a fish need?
I was soon educated: one of the fastest Google searches I’ve ever done (’zebrafish’ and ‘enrichment’) returned a very pertinent article among the top hits, Evolution of Standards in the Care and Use of Zebrafish in the Jan 2007 issue of Animal Lab News.
It turns out that zebrafish use is expanding because (i):
"The primary reasons most often cited to explain the growth in the use of zebrafish are a comparison of the animal relative to mammalian models in its fitness for the purpose (the primary purpose being the description of human development and disease).”
Evolution of Standards in the Care and Use of Zebrafish, Chris Obenschain and Steve Aldrich in Animal Lab News Jan 2007
and (ii) they are a hardy species that can be bred and maintained in a variety of conditions. Therefore labs have developed their own procedures and conditions (1); some of which will be less ideal than others and so place extra stress on the fish.
This is a shining example of how seriously scientists and researchers take animal welfare – after all, members of the public care less about fish than cute furry animals, but scientists consider the needs of all species that they use regardless of the fluff factor.
This consideration – unsurprising from a community that works largely to alleviate human suffering – benefits people by producing good science: once the optimal environment is identified (i) labs can standardise conditions to make their results comparable (cutting down repetition of experiments), and (ii) stress can affect the results of an experiment meaning that the effect of the factor you wish to investigate may be masked or interfered with.
So aside from the ethical justifications (which would be sufficient reasons to improve the welfare),
Good welfare = better science = faster delivery of treatments
I look forward to hearing the conclusions of the LASA meeting.
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(1) It is important to note that generalised standards of care do exist – zebrafish are vertebrates and fall under existing legislation – but currently less is known about their care requirements compared with well-established lab models such as mice.
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February 19, 2007 | Monday
Proponents of pseudoscience unite!
Climate change sceptics, peddlers of ID and antivivisectionists all have one thing in common – a tendency to cherry-pick, or failing that, bastardise, science so that it seems to support their view.
This quote from Nature could be used to describe all three groups (although the article reference is about climate change sceptics).
"Their argument continues to shift,” says Naomi Oreskes, a geologist and science historian at the University of California, San Diego. “That makes it clear that the issue for them is not the science. Whatever the science is, they will try to find ways to question it.”
Climate change 2007: Climate sceptics switch focus to economics, Michael Hopkin
Nature 445, 8th Feb 2007, doi:10.1038/445582a
This spoof site about the dangers of ‘dihydrogen monoxide’ (water to the non-chemically minded) shows how anything can be supported by corkscrewed ‘science’.
Whilst we’re on the subject of pseudoscience, some of you may remember this blog of mine, Scientific method overthrown!
February 16, 2007 | Friday
Making babies
By
Tigger | Filed in
Science /
A human fertility drug has helped a gorilla conceive and have a healthy baby. It was discovered that Salome, a western lowland gorilla at Bristol Zoo Gardens suffered from diminished ovarian reserve – a condition previously only diagnosed in humans (see full story at BBC online, Fertility treatment aids gorilla). Western lowland gorillas are endangered, so anything that increases the success of breeding is crucial to saving the species.
This is another classic example of how animal research benefits both humans and animals – primates are used in reproductive research owing to their similar reproductive anatomy, endocrinology and other physiological features compared to humans… Now the karmic wheel has turned and primates are benefiting in return.
See also Bonobos treated for heart disease
February 05, 2007 | Monday
Overcoming obstacles in reducing primate use
The National Centre for the Replacement, Refinement and Reduction of Animals in Research (NC3Rs) has today issued a press release claiming that the use of primates in drug testing could be reduced in certain circumstances—in this case for the testing of monoclonal antibodies.
RDS strongly supports this targeted approach to identifying opportunities for reducing animal use. According to the NC3Rs, the next stage is to identify and tackle the obstacles, particularly around the validation and international acceptance of alternative tests by regulatory authorities. Questioning the scientific appropriateness of the primate model is also an important part of the work. The scientific community has never tried to pretend that animal models are perfect, or can deliver all the answers with total reliability, so the need for critical scrutiny and appraisal will always be relevant.
This is exactly the kind of valuable work which the NC3Rs should be undertaking, and is supported by the principle of a Parliamentary motion which already has the support of over 40 MPs. Please ask your own MP to support this ‘EDM number 429’.
Cargo Cult antivivisection
By
Zebedee | Filed in
Science /
Media /
I saw two mentions of Cargo Cult science on Saturday. I’d never heard of it before, so I went to look it up. Its relevance to animal research and antivivisection? Well, read on and judge for yourself.
Cargo Cult science was a term coined by the late great physicist Richard Feynman. He outlines the story in the book Surely you’re joking, Mr Feynman:
‘In the South Seas there is a cargo cult of people. During the war they saw airplanes with lots of good materials, and they want the same thing to happen now. So they’ve arranged to make things like runways, to put fires along the sides of the runways, to make a wooden hut for a man to sit in, with two wooden pieces on his head to headphones and bars of bamboo sticking out like antennas—he’s the controller—and they wait for the airplanes to land. They’re doing everything right. The form is perfect. It looks exactly the way it looked before. But it doesn’t work. No airplanes land. So I call these things cargo cult science, because they follow all the apparent precepts and forms of scientific investigation, but they’re missing something essential, because the planes don’t land.’
The first mention I saw of Cargo Cult science was in Saturday’s Bad Science column in The Guardian by Ben Goldacre, in which he has another pop at ‘nutritionist’ ‘Dr’ Gillain McKeith
‘Maybe this pamphlet is just a shortened and simplified version of [Gillian McKeith’s] PhD text, but if it is at all based on her thesis it is not a good advert for that as a scholarly work. Inside is what I could only describe as Cargo Cult science: she’s going through the motions, but the content, only closer inspection, is like an eerie parody of an academic text.’
Bad Science, Ben Goldacre, The Guardian 3 February 2007
Then Channel 4 aired the theories of the extraordinary Dr Aubrey De Grey on Saturday evening in Do You Want to Live Forever? (If you follow this link, you don’t get any information about the programme, unfortunately). He calls his theories – which do not seem to have been tested by any real experimental science – SENS (Strategies for Engineered Negligible Senescence). Anyway, half watching this programme, which made a reasonable stab at debunking De Grey’s ‘science’ there was a sequence showing the South Seas cargo cult – probably a re-creation.
De Grey’s theories do have some relevance to animal research, in that they don’t yet involve any. Calling De Grey a ‘well-informed flake’, Thomas Sutcliffe in today’s Independent TV review (unfortunately I couldn’t find it online) says:
‘It doesn’t help Dr De Grey’s standing with the bench scientists (the people who do the hard grind with fruit flies and rhesus monkeys) that his disciples range from the wilder frontiers of scientific prognostication.’
Thomas Sutcliffe’s TV review, The Independent, 5 Februay 2007
But wait a minute ... De Grey co-founded the Methuselah Foundation and the Methuselah Mouse Prize: ‘the premiere effort of the Methuselah Foundation and is being offered to the scientific research team who develops the longest living Mus musculus, the breed of mouse most commonly used in scientific research.’
How to define the longest living and thus trigger the award? Unfortunately I couldn’t work it out from a quick read of the website – life’s too short to get stuck into in all this Cargo Cult nonsense, I thought. I’ll just stick to debunking the antivivisection Cargo Cult.
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January 18, 2007 | Thursday
European Parliament Declaration on primates in science
A written declaration of five Members of the European Parliament on primates in scientific experiments was tabled last September. Such a statement is the equivalent of an Early Day Motion (EDM) in the UK Parliament. It has received 59 signatures (the EU Parliament has 732 members) so far. According to European Parliament rules, declarations only need to be discussed in the Parliament if more than half of the MEPs have signed it. The Declaration lapsed last Thursday (18 January 07).
The declaration is full of false claims:
It refers to the 5th World Congress on Alternatives and Animals Use in the Life Sciences in Berlin where a declaration was signed to bring about a global commitment to end primate experiments. The statement was signed by animal rights groups predominately, including ADI and NAVS. However, in December 2006, following a major independent review, the Weatherall report of the Academy of Medical Sciences, the Medical Research Council, the Royal Society and the Wellcome Trust was published. Some of the UK’s leading scientists reported that there is a strong moral and scientific case for the regulated use of non-human primates in research. I quote: `There is a strong scientific case for the carefully regulated use on non-human primates where there are no other means to address clearly defined questions of particular biological or medical importance.’ The key point is that whilst an eventual cessation of animal use can be an agreed aspiration, an immediate ban would have serious adverse medical and scientific impacts and would stop vital research into diseases like Parkinson and Aids.
The Declaration also claims that primates are the closest relatives of humans, sharing 98% of human DNA. Frankly, this is a quite meaningless statement. In 2005 the Nuffield Council on Bioethics report on the Ethics of Research involving animals’ wrote: `Knowledge about the percentage of shared DNA has limited application in helping to decide whether or not an animal experiences pain in ways similar to humans. We also share significant amounts of DNA with mice (96%) and fruit flies (70%) and indeed with crops such as bananas (50%). Having genes in common is information that is of limited relevance with respect to assessing welfare.’
The Declaration also falsely claimed that the very existence of primates is threatened by the bush meat, laboratory, entertainment and pet trades. It is clear that the authors of the Declaration do not know that the two most common species in research are the marmoset and the macaque monkey. The marmoset monkey is bred entirely in Europe. A significant proportion of the macaques are also purpose bred or from an area where they are a non-indigenous species that has a negative impact on indigenous flora and fauna. The authorities in those countries thus require active management of the non-indigenous species. None of these monkeys is listed as endangered by the Convention on International Trade in Endangered Species and the impact of research use is trivial compared to habitat destruction or the bush meat problem.
One would wish that politicians would inform themselves and listen to experts and scientists more closely before they sign a declaration filled with false claims.
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January 10, 2007 | Wednesday
Dust settles on Duff report
Antivivisection groups are still claiming that the clinical trial tragedy at Northwick Park Hospital was caused by a failure of animal studies. For example, a recent post by a previously unknown Marius Maxwell on the website of the antivivisection group VERO claims that ’imprecise animal-based research‘, including on TG1412 ’is reflected in tens of thousands of unnecessary human deaths‘. This Maxwell, who writes very imprecisely (we assume he means TGN1412), leaves strangely little information about where he works, his expertise or experience. Although he claims to be a neurosurgeon, how he is qualified to make such sweeping statements is left entirely open.
If it was true that animal research was to blame at Northwick Park, then that would imply that the thousands of other phase I clinical trials which have been run successfully over recent years were a shining testament to the success of animal research. A failure rate of less than 0.1 per cent can’t be bad.
But as ever, it’s not that simple. We can now turn to the genuinely expert views found in the so-called Duff Report, published in December 2006 by the Expert Scientific Group (ESG) that was set up to investigate the very serious adverse reactions that occurred in the first-in-man clinical trial of TGN1412.
The central conclusion of the report is that ’none of the pre-clinical development studies that were performed with TGN1412 predicted a safe dose for use in humans, even though current regulatory requirements were met‘. This included all the ‘alternative’ methods which antivivisection groups like to promote. For example, it was noted as a ’striking observation‘ that TGN1412 was ineffective when simply incubated with whole human blood or in other tests.
The Expert Scientific Group looked in great detail at the role of animal experiments in pre-clinical testing. They were rightly honest about both the benefits, and the limitations, of such studies. But their conclusions could not be more clear-cut. The group state that:
Most, if not all, new medicines arise from biological insights gained from well-designed animal studies. Important information can be learned about the intended pharmacological response of a new medicine, and its potential for adverse reactions, from studies in animal models.
Animal studies taking due regard of the three ‘Rs’ remain necessary for many aspects of pre-clinical development of novel agents including testing of ‘off-target’ and ‘on-target’ toxicity and understanding the fundamental biology relevant to a new medicine and its target molecules in the human. The key point we want to make is the importance of deciding what can be learned from animal studies in the pre-clinical development of a new medicine, and what limitations there might be when it comes to predicting the response, and dose-response relationship, in humans.
It is clear from the report that there remains much work to be done to elucidate the predictive value of the animal model for responses in humans. For example, the Expert Scientific Group sees possible value in using genetically modified animal cells, tissues or whole animal models, or cellular chimeras, to evaluate responses to human-specific agents. It is likely that we are only at the start of a whole new understanding of the relevance of animal models to these new biological agents. But to rule out animal studies now, as the antivivisectionists wish, would be a disaster.
Some of the other interesting findings in this report relate to ’a number of discrepancies‘ identified in the conduct of the clinical trial. For example, the company involved (Parexel) failed to complete the full medical background of a trial subject in writing. It is strange that when occasionally animal studies are found to be poorly designed or conducted, the whole relevance of animal research is questioned by some commentators (see for example our earlier blog on the Guardian article and BMJ paper claiming that many animal tests are ‘badly flawed’). But when clinical trials are poorly conducted, it’s obvious that they simply need to be improved.
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January 05, 2007 | Friday
BMJ vote for top medical milestones
By
Tigger | Filed in
Science /
Needless to say, animal research is a main feature of several of the 15 listed. They are a strangely mixed bag, ranging from whole disciplines such as immunology to specific advances such as chlorpromazine for schizophrenia. Voting for any one in preference to the others is almost impossible.
Although not necessarily directly acknowledged (reference is usually to technologies that directly rely on animal research eg vaccines) in all the entries, it’s the keystone of five of the landmarks listed (monoclonal antibodies, antibiotics, anaesthesia, vaccines and tissue culture).
In addition, it is implicated – again through research or technologies relying on animal research – in five others; even in some that are more concept than hard science (eg evidence-based medicine and the promise of genetics).
Of the remaining five that don’t reference animal research (or its dependent technologies), three are speculative/ concept entries or societal actions that impacted on human health. Although the importance of events such as sanitation cannot be denied, some – including an advocate of a different medical landmark in the list – have wondered whether they qualify as a ‘medical milestone’:
Clean drinking water and effective sewage disposal are of enormous benefit to public health, but in my book they are not a medical milestone because only the consequence, not the originator, is medical in nature.
Prof Carl Djerassi, The pill: emblem of liberation, BMJ 2007 334:15, doi: 10.1136/bmj.39051.582546.94
Quibbling aside, the fact that two-thirds of the milestones reference or rely on animal research in some way validates (once again) the contribution such research has made to human health(1). The remainder include new techniques such as MRI(2), developed through the ingenuity of scientists, which are aiding the research community’s commitment to the 3Rs.
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(1) and at a similar proportion to other recognition of important biomed research – 70% of the Nobel Prizes awarded for Physiology or Medicine relied heavily on, or involved, animal research.
(2) and even this is used in some research done with animals.
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January 03, 2007 | Wednesday
More microdosing mumbo jumbo
By
Zebedee | Filed in
Science /
Media /
Good to see that the crack troops at SAS (Sense About Science) have included misguided mumbo jumbo about microdosing in their celebrity slag-off today. Apparently TV actress Jenny Seagrove (of Waitrose ads and Judge John Deed fame) said that microdosing could replace ‘animals and primates’ (so primates are not animals?) in research. Pharmacologist Professor Nancy Rothwell, Vice President for Research at Manchester University and chair of RDS, countered:
The mistake is understandable Jenny, but microdosing is a technique for measuring how small doses of drugs move around the body. It has not yet been properly validated, but in the future it may replace some animal tests. Unfortunately, if we want new medicines for diseases like cancer or cystic fibrosis, there are some cases where there are no alternatives to using animals.
Also animal-rights-inspired was Heather Mills McCartney’s feeble attempt to link milk drinking and obesity. See more nonsense from the celebs, and sense from the scientists, in a leaflet on the SAS website and some excellent reporting by The Guardian and the BBC. The Sun got in the act, too, with Profs Rap Dim Star Comments. Mental images of Professors rapping about astronomy. Hmmm.
December 19, 2006 | Tuesday
No place for absolutism
Interesting feature on the animal experimentation debate in last week’s science journal Nature. Amongst other things, they did an anonymous international online poll of nearly 1700 biomedical researchers. About half of them used animals in their research.
When asked to rate how necessary animal research was for progressing biomedical science on a scale of 1 (not at all necessary) to 4 (essential), three quarters of all respondents, including those who did not work with animals themselves, said it was essential. About a fifth rated it as 3, and only a tiny minority (about 1%) thought it unnecessary. So much for antivivisection claims that lots of scientists oppose animal research.
Nature commented that:
‘many scientists who work on animals have complex takes on the issue. But they are not often willing, or encouraged, to express these feelings. Some of this is directly due to fear of animal-rights extremists; some is an indirect effect of the polarized atmosphere that surrounds the issue. In some labs, at least, scientists feel pressured to keep quiet about the grey areas of debate, lest they undermine the official mantra.’
RDS is not quite sure where this pressure comes from, or what the ‘official mantra’ is, but we assume it is a dig at pressure groups such as ourselves! So it is good to know that, with absolutely no input (or pressure!) from RDS, 99% of the researchers polled rated animal research as essential or at least necessary. Many also commented that scientists needed to engage more with the public and discuss animal research more openly. Less than half of those involved in animal research, however, said they did so. If more did so, a larger majority of the public might also move to the view that animal research is essential or necessary.
Nature introduced the feature by characterising the debate as polarised: ‘the voice of the middle ground has been lost’. However, when the vast majority of biomedical scientists appreciate the necessity of animal research, and the antivivisection and animal rights groups only call for outright bans (see also Mark Henderson’s excellent piece in The Times on Saturday) it is difficult to see where the middle ground lies.
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December 15, 2006 | Friday
If at first you don't succeed ... slice the salami a bit thinner
The Guardian today published a short news item Many animal tests are badly flawed, say scientists. This news item was based on a paper in this week’s British Medical Journal, and the subject of a BMJ press release.
I thought it looked very familiar. I checked, and it seems this is research published as a report on the University of Birmingham website six months ago. I thought its conclusions were a bit dodgy then and I blogged it here.
This is just the same research redrafted for the BMJ. If at first you don’t succeed in getting publicity, just redraft your paper and get it published in a different place. If you’re lucky you might then get the national newspapers interested in a story based on an exaggeration that is six months old anyway.
Rather than bury this as a comment on an old blog entry I thought I’d follow their example and do a new one to put it right at the top.
December 12, 2006 | Tuesday
Yet another scientific enquiry
There can be few areas of scientific research which have been subject to so much public debate and scrutiny, as well as detailed scientific investigation, as the use of animals in research.
Today we see the publication of yet another in-depth enquiry - the report of the Weatherall Committee into The Use of Non-Human Primates in Research. Like all the other enquiries before it, this one concludes that there is a strong scientific case for the carefully regulated use of animals in research - in this case non-human primates.
Will the animal rights groups take any notice of this report? We barely need to ask the question. They will never accept the results of any enquiry unless it gives them the answer they want (ie total abolition of animal research) - and that is unlikely for the foreseeable future.
December 08, 2006 | Friday
Clinical trials and bombs - the media reports
The BBC 10 o’clock news on 7th December showed how media coverage of the issue of the use of animals in research has moved on. A report on the Northwick Park drug trial was followed by a report on the conviction of an animal rights bomber
First of all what about the drug trial? The official report focused on what it should; learning from problems and the impact on the volunteer who was affected. We certainly should learn from this episode, just because things go right most of the time does not mean we cannot learn and change. However animal testing abolitionist groups continue to say that the animal tests failed, this shows a general failure, and all animal testing should be stopped. An example from the BUAV:
The problem is that the differences between animals and humans always confound the results of these tests and radical new treatments like these desperately need testing with something far more accurate, relevant and reliable than animals.
However this official report states:
pre-clinical tests performed in human and animal cells, and in animal models, failed to predict the human response to the starting dose of TGN1412 given in the trial.
Perhaps the absence of further histrionics from these groups may be because even they realise that logically they should now call for a ban on these cell tests … because these also failed! We await such a BUAV press release with baited breath!
Delve deeper into the report and you are struck by the sheer volume of non-animal data used for safety assessment. Again this rubbishes claims that the pharmaceutical industry does not use these non-animal tests. The reports’ overall conclusion on the use of animals is:
Animal studies taking due regard of the three ‘Rs’, (refinement, reduction and replacement of animals in testing) remain necessary for many aspects of pre-clinical development of novel agents including testing of ‘off-target’ and ‘on-target’ toxicity and understanding the fundamental biology relevant to a new medicine and its target molecules in the human. Most, if not all, new medicines arise from biological insights gained from well-designed animal studies. The key point we want to make is the importance of deciding what can be learned from animal studies in the pre-clinical development of a new medicine, and what limitations there might be when it comes to predicting the response, and dose-response relationship, in humans.
No wonder the media, such as the BBC, now steer well clear of BUAV etc, and realise that including their views is not ‘balance’ but merely promulgates junk science.
Second it is great news about a 12 year sentence for Donald Currie. A dangerous criminal has been taken out of circulation. The sentence of a ‘life sentence with a licence for life’ is exactly what is needed. Anybody who has seen people with his views and approaches (and many have seen this on recent TV programmes ) will realise that they are un-reformable.
Let’s hope the parole board recognises this as well!
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